import necessary modules

set path to the file to be analyzed; define the clustering parameters and minimum amplitude of localizations

decide if size filter should be applied

overview function for all boutons in one file

shows masked boutons and AZ alpha shapes

core function for cluster analysis of all AZs in one file

core function for ripley analysis of all AZs in one file

choose functions for analysis of file

look at normalized histograms

units: for areas "nm2", for density "localizations per µm2", for radial distance (rd focom from socom) "nm"

group by AZ name and get the mean values for the whole file

get the values of the individual AZs

mean values for one AZ

generate averaged H function

generate K, L and H for poisson distribution

and plot

background analysis